C16 Cy5 SM

Catalog NumberBL-M000419
CAS Number2342574-13-2
DescriptionC16 Cy5 SM, a highly sophisticated fluorescent dye employed extensively in the realm of biomedicine for its exceptional imaging and detection capabilities. This remarkable substance finds prevalent application in the intricate process of labeling proteins, DNA, and cells, facilitating precision in fluorescence microscopy and flow cytometry analyses.
IUPAC Name2-((2-(6-(3,3-dimethyl-2-((1E,3E)-5-((E)-1,3,3-trimethylindolin-2-ylidene)penta-1,3-dien-1-yl)-3H-indol-1-ium-1-yl)hexanamido)ethyl)dimethylammonio)ethyl ((2S,3R,E)-3-hydroxy-2-palmitamidooctadec-4-en-1-yl) phosphate chloride
SynonymsN-palmitoyl sphingomyelin-N-(Cyanine 5); 2-[{2-[(6-{3,3-Dimethyl-2-[(1E,3E,5E)-5-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)-1,3-pentadien-1-yl]-3H-indolium-1-yl}hexanoyl)amino]ethyl}(dimethyl)ammonio]ethyl (2S,3R,4E)-3-hydroxy-2-(palmitoylamino)-4-octadecen-1-yl phosphate chloride; 3H-Indolium, 2-[(1E,3E,5E)-5-(1,3-dihydro-1,3,3-trimethyl-2H-indol-2-ylidene)-1,3-pentadien-1-yl]-1-[6-[[2-[[2-[[hydroxy[[(2S,3R,4E)-3-hydroxy-2-[(1-oxohexadecyl)amino]-4-octadecen-1-yl]oxy]phosphinyl]oxy]ethyl]dimethylammonio]ethyl]amino]-6-oxohexyl]-3,3-dimethyl-, chloride, inner salt (1:1)
Molecular Weight1233.17
Molecular FormulaC72H119ClN5O7P
Purity>99%
SolubilitySoluble in Chloroform, Methanol, Water
AppearanceChloroform
Shelf Life1 Year
StorageStore at -20°C
Percent CompositionC 70.13%, H 9.73%, Cl 2.87%, N 5.68%, O 9.08%, P 2.51%
Canonical SMILES[Cl-].CC1(C)/C(=C\C=C\C=C\C2=[N+](CCCCCC(=O)NCC[N+](C)(C)CCOP([O-])(=O)OC[C@H](NC(=O)CCCCCCCCCCCCCCC)[C@H](O)/C=C/CCCCCCCCCCCCC)C3C=CC=CC=3C2(C)C)/N(C)C2C=CC=CC1=2
InChIInChI=1S/C72H118N5O7P.ClH/c1-10-12-14-16-18-20-22-24-26-28-30-32-36-50-66(78)63(74-70(80)54-39-33-31-29-27-25-23-21-19-17-15-13-11-2)60-84-85(81,82)83-59-58-77(8,9)57-55-73-69(79)53-40-35-45-56-76-65-49-44-42-47-62(65)72(5,6)68(76)52-38-34-37-51-67-71(3,4)61-46-41-43-48-64(61)75(67)7;/h34,36-38,41-44,46-52,63,66,78H,10-33,35,39-40,45,53-60H2,1-9H3,(H-2,73,74,79,80,81,82);1H/b50-36+;/t63-,66+;/m0./s1
InChI KeyXYEWDVYFFFFTIK-YJPWXOHASA-N

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